STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNAN_3183Polysaccharide deacetylase. (282 aa)    
Predicted Functional Partners:
RNAN_3185
Glycosyltransferase.
 
     0.947
RNAN_3184
FemAB-like protein.
 
   
 0.946
RNAN_3186
Hypothetical protein.
 
     0.946
RNAN_3189
Group 1 glycosyl transferase.
 
     0.938
RNAN_3187
Phosphatidylinositol glycan, class A.
 
     0.937
RNAN_3182
Sugar transferase domain-containing protein.
 
     0.927
paaK
phenylacetate-CoA ligase.
 
     0.917
wza-2
Polysaccharide export outer membrane protein.
 
     0.899
RNAN_3180
Lipopolysaccharide biosynthesis protein.
 
     0.888
asnB-3
Asparagine synthase; Glutamine-hydrolysing.
 
     0.884
Your Current Organism:
Rheinheimera nanhaiensis
NCBI taxonomy Id: 562729
Other names: R. nanhaiensis E407-8, Rheinheimera nanhaiensis E407-8, Rheinheimera nanhaiensis str. E407-8, Rheinheimera nanhaiensis strain E407-8, Rheinheimera sp. E407-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.