STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Btus_0270PFAM: cyclase family protein; KEGG: gyc:GYMC61_2761 cyclase family protein. (220 aa)    
Predicted Functional Partners:
Btus_0269
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: gyc:GYMC61_2760 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
     
 0.836
Btus_0268
PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: gyc:GYMC61_2759 permease for cytosine/purines uracil thiamine allantoin; Belongs to the purine-cytosine permease (2.A.39) family.
 
     0.831
Btus_0267
Agmatinase; KEGG: tro:trd_0528 putative agmatinase; TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
 
     0.807
Btus_2774
Transcriptional regulator, XRE family; KEGG: ckr:CKR_1206 hypothetical protein; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein.
  
    0.713
Btus_0266
PAS modulated sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold-4 domain protein; helix-turn-helix Fis- type; KEGG: gyc:GYMC61_2756 PAS modulated sigma54 specific transcriptional regulator, fis family; SMART: AAA ATPase; PAS domain containing protein.
  
    0.439
Your Current Organism:
Kyrpidia tusciae
NCBI taxonomy Id: 562970
Other names: Bacillus tusciae DSM 2912, K. tusciae DSM 2912, Kyrpidia tusciae DSM 2912, Kyrpidia tusciae NBRC 15312, Kyrpidia tusciae str. DSM 2912, Kyrpidia tusciae strain DSM 2912
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