STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Btus_0291PFAM: protein of unknown function DUF125 transmembrane; KEGG: sus:Acid_0168 hypothetical protein. (235 aa)    
Predicted Functional Partners:
Btus_0292
Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
       0.622
Btus_1147
PFAM: multicopper oxidase type 3; multicopper oxidase type 2; KEGG: aac:Aaci_2455 multicopper oxidase type 3.
 
   
 0.496
Btus_0290
TIGRFAM: asparagine synthase (glutamine- hydrolyzing); KEGG: mta:Moth_1299 asparagine synthase, glutamine- hydrolyzing; PFAM: asparagine synthase; glutamine amidotransferase class-II.
       0.495
Btus_0523
KEGG: phe:Phep_2955 40-residue YVTN family beta- propeller repeat protein; TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: phosphoesterase; NHL repeat containing protein.
  
     0.429
Btus_0293
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: sth:STH907 RNA polymerase factor sigma C; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
       0.418
Btus_0294
Hypothetical protein; KEGG: mva:Mvan_3021 FHA domain-containing protein.
       0.418
Btus_0285
KEGG: aac:Aaci_1122 cation diffusion facilitator family transporter; TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
 
 
 0.411
Your Current Organism:
Kyrpidia tusciae
NCBI taxonomy Id: 562970
Other names: Bacillus tusciae DSM 2912, K. tusciae DSM 2912, Kyrpidia tusciae DSM 2912, Kyrpidia tusciae NBRC 15312, Kyrpidia tusciae str. DSM 2912, Kyrpidia tusciae strain DSM 2912
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