STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Btus_0558KEGG: sul:SYO3AOP1_0717 conserved hypothetical protein, putative cytochrome. (460 aa)    
Predicted Functional Partners:
Btus_2233
KEGG: aac:Aaci_1937 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II.
  
 
 0.966
Btus_0559
KEGG: cpi:Cpin_6090 cytochrome c class I.
 
     0.927
Btus_2234
TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: bsu:BSU38740 ABC membrane transporter (ATP- binding protein) required for cytochrome bd function; SMART: AAA ATPase.
  
  
 0.654
Btus_2235
TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; KEGG: gym:GYMC10_6017 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; SMART: AAA ATPase.
  
  
 0.588
Btus_0560
Transcriptional regulator, DeoR family; KEGG: bay:RBAM_004210 YcnK; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR.
 
     0.555
Btus_1703
PFAM: cytochrome c class I; KEGG: bbe:BBR47_24910 menaquinol-cytochrome c reductase cytochrome b/c subunit.
 
  
 0.513
Btus_1230
PFAM: protein of unknown function DUF839; copper amine oxidase domain protein; KEGG: mca:MCA1083 hypothetical protein.
  
    0.420
Btus_0561
KEGG: bcy:Bcer98_2787 hypothetical protein.
 
     0.408
Your Current Organism:
Kyrpidia tusciae
NCBI taxonomy Id: 562970
Other names: Bacillus tusciae DSM 2912, K. tusciae DSM 2912, Kyrpidia tusciae DSM 2912, Kyrpidia tusciae NBRC 15312, Kyrpidia tusciae str. DSM 2912, Kyrpidia tusciae strain DSM 2912
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