STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Btus_0640PFAM: Lipoprotein LpqB, GerMN domain; KEGG: bbe:BBR47_17880 germination protein. (333 aa)    
Predicted Functional Partners:
Btus_0721
KEGG: sth:STH1861 stage III sporulation protein SpoAB; TIGRFAM: stage III sporulation protein AB; PFAM: Sporulation stage III protein AB.
  
    0.775
Btus_1319
KEGG: bcy:Bcer98_2791 sporulation stage II protein M; TIGRFAM: stage II sporulation protein M; PFAM: protein of unknown function DUF95 transmembrane.
  
     0.729
Btus_0725
PFAM: Sporulation stage III protein AF; KEGG: bbe:BBR47_23270 stage III sporulation protein AF.
  
    0.713
Btus_0707
KEGG: bpu:BPUM_2191 hypothetical protein.
  
     0.704
Btus_0724
KEGG: pjd:Pjdr2_2298 stage III sporulation protein AE; TIGRFAM: stage III sporulation protein AE; PFAM: Sporulation stage III protein AE.
  
     0.703
Btus_3217
PFAM: Protein of unknown function DUF1779; KEGG: aac:Aaci_2754 hypothetical protein.
  
     0.692
Btus_1778
KEGG: bcy:Bcer98_1896 spore germination YpeB; TIGRFAM: germination protein YpeB; PFAM: Propeptide PepSY amd peptidase M4.
  
     0.680
Btus_2987
KEGG: pjd:Pjdr2_5762 hypothetical protein.
  
     0.670
Btus_0092
SMART: protein phosphatase 2C domain protein; TIGRFAM: stage II sporulation protein E; KEGG: bbe:BBR47_01160 stage II sporulation protein E; PFAM: Stage II sporulation E family protein.
  
     0.660
Btus_0726
TIGRFAM: stage III sporulation protein AG; KEGG: bha:BH2791 mutants block sporulation after engulfment.
  
    0.651
Your Current Organism:
Kyrpidia tusciae
NCBI taxonomy Id: 562970
Other names: Bacillus tusciae DSM 2912, K. tusciae DSM 2912, Kyrpidia tusciae DSM 2912, Kyrpidia tusciae NBRC 15312, Kyrpidia tusciae str. DSM 2912, Kyrpidia tusciae strain DSM 2912
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