STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Btus_0898Putative sigma54 specific transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; PAS fold domain protein; KEGG: tex:Teth514_1926 sigma-54 dependent trancsriptional regulator; SMART: AAA ATPase; PAS domain containing protein. (579 aa)    
Predicted Functional Partners:
Btus_2145
KEGG: sth:STH239 RNA polymerase sigma-54 factor; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor.
 
   
 0.789
Btus_0897
PFAM: Asparaginase/glutaminase; KEGG: bmr:BMI_I1982 L-asparaginase type II, putative.
       0.518
Btus_0964
Putative transcriptional regulator, PucR family; PFAM: Activator of aromatic catabolism; 4-vinyl reductase 4VR; KEGG: tmz:Tmz1t_1844 PAS/PAC sensor signal transduction histidine kinase.
    
 0.502
Btus_0896
PFAM: polysaccharide deacetylase; KEGG: cjd:JJD26997_0672 polysaccharide deacetylase family protein.
       0.475
Btus_0899
PFAM: major facilitator superfamily MFS_1; KEGG: rxy:Rxyl_2739 major facilitator transporter.
       0.466
Your Current Organism:
Kyrpidia tusciae
NCBI taxonomy Id: 562970
Other names: Bacillus tusciae DSM 2912, K. tusciae DSM 2912, Kyrpidia tusciae DSM 2912, Kyrpidia tusciae NBRC 15312, Kyrpidia tusciae str. DSM 2912, Kyrpidia tusciae strain DSM 2912
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