STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Btus_1019PFAM: class II aldolase/adducin family protein; KEGG: tth:TTC0412 L-ribulose-phosphate 4-epimerase. (360 aa)    
Predicted Functional Partners:
Btus_0327
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
  
 0.554
Btus_1571
TIGRFAM: 4-hydroxyphenylacetate 3-monooxygenase, oxygenase subunit; KEGG: aac:Aaci_0339 4-hydroxyphenylacetate 3- monooxygenase, oxygenase subunit; PFAM: 4-hydroxyphenylacetate 3-hydroxylase.
  
     0.537
Btus_1131
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: tth:TT_P0074 acyl-CoA dehydrogenase AidB.
  
    0.532
Btus_1018
KEGG: aac:Aaci_2883 hypothetical protein.
       0.506
Btus_2871
KEGG: min:Minf_1264 ribulose bisophosphate carboxylase; PFAM: ribulose bisphosphate carboxylase large chain; Ribulose bisphosphate carboxylase, large subunit- like; Belongs to the RuBisCO large chain family.
  
  
 0.494
Btus_1020
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bbt:BBta_3170 putative short-chain dehydrogenase/reductase.
       0.449
Btus_2072
PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: rca:Rcas_2414 4-hydroxyphenylacetate 3- hydroxylase.
  
     0.415
mtnA
Translation initiation factor, aIF-2BI family; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
  
  
 0.413
Your Current Organism:
Kyrpidia tusciae
NCBI taxonomy Id: 562970
Other names: Bacillus tusciae DSM 2912, K. tusciae DSM 2912, Kyrpidia tusciae DSM 2912, Kyrpidia tusciae NBRC 15312, Kyrpidia tusciae str. DSM 2912, Kyrpidia tusciae strain DSM 2912
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