STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Btus_1656KEGG: gvi:gsr3843 hypothetical protein. (90 aa)    
Predicted Functional Partners:
Btus_1653
KEGG: bce:BC2120 respiratory nitrate reductase delta chain; TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase delta subunit.
       0.800
Btus_1654
TIGRFAM: nitrate reductase, beta subunit; KEGG: gtn:GTNG_1713 nitrate reductase beta subunit.
       0.800
Btus_1655
TIGRFAM: nitrate reductase, alpha subunit; KEGG: gtn:GTNG_0653 respiratory nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.800
Btus_1657
KEGG: gtn:GTNG_0652 hypothetical protein.
       0.800
Btus_1652
TIGRFAM: respiratory nitrate reductase, gamma subunit; KEGG: gtn:GTNG_0656 respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase gamma subunit.
       0.696
Btus_1658
PFAM: major facilitator superfamily MFS_1; KEGG: gka:GK0766 nitrate/nitrite transporter.
       0.571
Btus_1650
TIGRFAM: DNA binding domain protein, excisionase family; PFAM: Resolvase domain; regulatory protein MerR; KEGG: tsi:TSIB_2042 IS element ISTsi1 orfA, putative resolvase; SMART: regulatory protein MerR.
       0.427
Btus_1651
Protein of unknown function DUF542 ScdA domain protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.
       0.427
Btus_1649
KEGG: adg:Adeg_0154 transposase, IS605 OrfB family; TIGRFAM: transposase, IS605 OrfB family; PFAM: transposase IS605 OrfB.
       0.404
Your Current Organism:
Kyrpidia tusciae
NCBI taxonomy Id: 562970
Other names: Bacillus tusciae DSM 2912, K. tusciae DSM 2912, Kyrpidia tusciae DSM 2912, Kyrpidia tusciae NBRC 15312, Kyrpidia tusciae str. DSM 2912, Kyrpidia tusciae strain DSM 2912
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