STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Btus_1699KEGG: aac:Aaci_1659 sporulation integral membrane protein YlbJ; TIGRFAM: sporulation integral membrane protein YlbJ; PFAM: nucleoside recognition domain protein. (418 aa)    
Predicted Functional Partners:
Btus_0770
PFAM: putative stage IV sporulation YqfD; KEGG: bbe:BBR47_20610 putative stage IV sporulation protein.
 
   
 0.834
Btus_3254
KEGG: aac:Aaci_2778 stage II sporulation protein R; TIGRFAM: stage II sporulation protein R; PFAM: Sporulation stage II protein R.
  
   
 0.809
Btus_3211
TIGRFAM: sporulation transcriptional regulator SpoIIID; KEGG: aac:Aaci_2750 sporulation transcriptional regulator SpoIIID.
  
  
 0.801
Btus_1848
PFAM: peptidase U4 sporulation factor SpoIIGA; KEGG: pjd:Pjdr2_3883 sigma-E processing peptidase SpoIIGA.
  
   
 0.794
Btus_0724
KEGG: pjd:Pjdr2_2298 stage III sporulation protein AE; TIGRFAM: stage III sporulation protein AE; PFAM: Sporulation stage III protein AE.
  
    0.781
Btus_0723
KEGG: pth:PTH_1169 hypothetical protein; TIGRFAM: stage III sporulation protein AD; PFAM: Sporulation stage III protein AD.
  
     0.772
Btus_1319
KEGG: bcy:Bcer98_2791 sporulation stage II protein M; TIGRFAM: stage II sporulation protein M; PFAM: protein of unknown function DUF95 transmembrane.
  
   
 0.772
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
     0.771
Btus_1845
KEGG: aac:Aaci_1292 sporulation protein, YlmC/YmxH family; TIGRFAM: sporulation protein, YlmC/YmxH family; PFAM: PRC-barrel domain protein.
  
     0.769
Btus_0720
KEGG: aac:Aaci_1793 stage III sporulation protein AA; TIGRFAM: stage III sporulation protein AA; SMART: AAA ATPase.
  
   
 0.768
Your Current Organism:
Kyrpidia tusciae
NCBI taxonomy Id: 562970
Other names: Bacillus tusciae DSM 2912, K. tusciae DSM 2912, Kyrpidia tusciae DSM 2912, Kyrpidia tusciae NBRC 15312, Kyrpidia tusciae str. DSM 2912, Kyrpidia tusciae strain DSM 2912
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