STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Btus_1833KEGG: gka:GK2307 stage V sporulation protein AA. (221 aa)    
Predicted Functional Partners:
Btus_1832
SpoVAB; KEGG: bld:BLi02493 SpoVAB.
 
  
 0.965
Btus_1831
KEGG: aac:Aaci_1743 stage V sporulation protein AC; TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein.
 
  
 0.769
Btus_1830
KEGG: gym:GYMC10_1703 stage V sporulation protein AD; TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein.
 
  
 0.684
Btus_1595
Hypothetical protein; KEGG: bwe:BcerKBAB4_4127 major facilitator transporter.
  
     0.653
Btus_1834
RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.648
spoIIAB
Putative anti-sigma regulatory factor, serine/threonine protein kinase; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
 
     0.647
Btus_1829
KEGG: bha:BH1570 sporulation protein; TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein.
 
   
 0.639
Btus_0092
SMART: protein phosphatase 2C domain protein; TIGRFAM: stage II sporulation protein E; KEGG: bbe:BBR47_01160 stage II sporulation protein E; PFAM: Stage II sporulation E family protein.
  
     0.629
Btus_0724
KEGG: pjd:Pjdr2_2298 stage III sporulation protein AE; TIGRFAM: stage III sporulation protein AE; PFAM: Sporulation stage III protein AE.
  
     0.627
Btus_1927
CotJB protein; KEGG: gwc:GWCH70_2188 CotJB protein.
  
     0.621
Your Current Organism:
Kyrpidia tusciae
NCBI taxonomy Id: 562970
Other names: Bacillus tusciae DSM 2912, K. tusciae DSM 2912, Kyrpidia tusciae DSM 2912, Kyrpidia tusciae NBRC 15312, Kyrpidia tusciae str. DSM 2912, Kyrpidia tusciae strain DSM 2912
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