STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Btus_1876PFAM: helix-turn-helix HxlR type; KEGG: amu:Amuc_0802 transcriptional regulator, HxlR family. (100 aa)    
Predicted Functional Partners:
Btus_1875
Hypothetical protein; KEGG: bmr:BMI_II1181 branched chain amino acid ABC transporter, ATP-binding/permease protein.
       0.601
Btus_1874
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: gym:GYMC10_2409 haloacid dehalogenase domain protein hydrolase.
       0.517
Btus_1873
KEGG: pjd:Pjdr2_3918 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein.
       0.509
Btus_0215
Transcriptional modulator of MazE/toxin, MazF; Toxic component of a type II toxin-antitoxin (TA) system.
   
    0.461
Btus_0917
PFAM: PemK family protein; KEGG: dau:Daud_0402 transcriptional modulator of MazE/toxin, MazF.
   
    0.461
Btus_3196
Transcriptional modulator of MazE/toxin, MazF; PFAM: PemK family protein; KEGG: gka:GK1648 ppGpp-regulated growth inhibitor (ChpA/MazF).
   
    0.461
Your Current Organism:
Kyrpidia tusciae
NCBI taxonomy Id: 562970
Other names: Bacillus tusciae DSM 2912, K. tusciae DSM 2912, Kyrpidia tusciae DSM 2912, Kyrpidia tusciae NBRC 15312, Kyrpidia tusciae str. DSM 2912, Kyrpidia tusciae strain DSM 2912
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