STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Btus_2319PFAM: Extradiol ring-cleavage dioxygenase LigAB LigA subunit; KEGG: saz:Sama_2383 hypothetical protein. (86 aa)    
Predicted Functional Partners:
Btus_2320
PFAM: alpha/beta hydrolase fold; KEGG: swi:Swit_3055 alpha/beta hydrolase fold.
    
  0.962
Btus_2318
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: ttu:TERTU_1262 aromatic ring-opening dioxygenase, catalytic LigB subunit family protein.
    
  0.951
Btus_2316
PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: swi:Swit_0889 aromatic-ring-hydroxylating dioxygenase, beta subunit.
       0.424
Btus_2317
Rieske (2Fe-2S) iron-sulfur domain protein; PFAM: Rieske [2Fe-2S] iron-sulphur domain; Aromatic- ring-hydroxylating dioxygenase, alpha subunit-like; KEGG: art:Arth_4346 Rieske (2Fe-2S) domain- containing protein.
       0.424
Your Current Organism:
Kyrpidia tusciae
NCBI taxonomy Id: 562970
Other names: Bacillus tusciae DSM 2912, K. tusciae DSM 2912, Kyrpidia tusciae DSM 2912, Kyrpidia tusciae NBRC 15312, Kyrpidia tusciae str. DSM 2912, Kyrpidia tusciae strain DSM 2912
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