STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Btus_3213KEGG: mta:Moth_2374 sporulation protein and related proteins; TIGRFAM: stage II sporulation protein D; SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein. (329 aa)    
Predicted Functional Partners:
Btus_1764
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.883
Btus_3212
PFAM: Peptidase M23; KEGG: bbe:BBR47_54300 forespore-expressed protein.
 
   
 0.840
Btus_1221
KEGG: gwc:GWCH70_2443 stage II sporulation protein P; TIGRFAM: stage II sporulation protein P; PFAM: Stage II sporulation P family protein.
  
  
 0.810
Btus_3211
TIGRFAM: sporulation transcriptional regulator SpoIIID; KEGG: aac:Aaci_2750 sporulation transcriptional regulator SpoIIID.
 
   
 0.786
Btus_0084
Sporulation protein YabP; KEGG: bha:BH0074 hypothetical protein; TIGRFAM: sporulation protein YabP; PFAM: YabP family protein.
 
   
 0.742
spoIIAB
Putative anti-sigma regulatory factor, serine/threonine protein kinase; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
   
 0.724
Btus_1847
RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.707
Btus_1831
KEGG: aac:Aaci_1743 stage V sporulation protein AC; TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein.
  
   
 0.699
Btus_1829
KEGG: bha:BH1570 sporulation protein; TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein.
  
     0.698
Btus_1921
KEGG: amt:Amet_4225 sporulation stage V, protein AC; TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein.
  
   
 0.686
Your Current Organism:
Kyrpidia tusciae
NCBI taxonomy Id: 562970
Other names: Bacillus tusciae DSM 2912, K. tusciae DSM 2912, Kyrpidia tusciae DSM 2912, Kyrpidia tusciae NBRC 15312, Kyrpidia tusciae str. DSM 2912, Kyrpidia tusciae strain DSM 2912
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