STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Btus_3254KEGG: aac:Aaci_2778 stage II sporulation protein R; TIGRFAM: stage II sporulation protein R; PFAM: Sporulation stage II protein R. (277 aa)    
Predicted Functional Partners:
Btus_0720
KEGG: aac:Aaci_1793 stage III sporulation protein AA; TIGRFAM: stage III sporulation protein AA; SMART: AAA ATPase.
  
  
 0.823
Btus_3211
TIGRFAM: sporulation transcriptional regulator SpoIIID; KEGG: aac:Aaci_2750 sporulation transcriptional regulator SpoIIID.
  
   
 0.822
Btus_0084
Sporulation protein YabP; KEGG: bha:BH0074 hypothetical protein; TIGRFAM: sporulation protein YabP; PFAM: YabP family protein.
  
  
 0.817
Btus_0076
KEGG: aac:Aaci_0183 transcriptional regulator, AbrB family; TIGRFAM: stage V sporulation protein T; transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein.
  
   
 0.816
Btus_0092
SMART: protein phosphatase 2C domain protein; TIGRFAM: stage II sporulation protein E; KEGG: bbe:BBR47_01160 stage II sporulation protein E; PFAM: Stage II sporulation E family protein.
  
   
 0.816
Btus_0770
PFAM: putative stage IV sporulation YqfD; KEGG: bbe:BBR47_20610 putative stage IV sporulation protein.
  
  
 0.816
Btus_1764
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.816
spoIIAB
Putative anti-sigma regulatory factor, serine/threonine protein kinase; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
   
 0.813
Btus_1699
KEGG: aac:Aaci_1659 sporulation integral membrane protein YlbJ; TIGRFAM: sporulation integral membrane protein YlbJ; PFAM: nucleoside recognition domain protein.
  
   
 0.809
Btus_1848
PFAM: peptidase U4 sporulation factor SpoIIGA; KEGG: pjd:Pjdr2_3883 sigma-E processing peptidase SpoIIGA.
 
   
 0.809
Your Current Organism:
Kyrpidia tusciae
NCBI taxonomy Id: 562970
Other names: Bacillus tusciae DSM 2912, K. tusciae DSM 2912, Kyrpidia tusciae DSM 2912, Kyrpidia tusciae NBRC 15312, Kyrpidia tusciae str. DSM 2912, Kyrpidia tusciae strain DSM 2912
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