STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saut_0082KEGG: sun:SUN_0492 hypothetical protein. (43 aa)    
Predicted Functional Partners:
Saut_0081
KEGG: sun:SUN_0898 hypothetical protein.
       0.655
Saut_0080
KEGG: tdn:Suden_1996 putative lipoprotein; SPTR: A0Y742 Putative lipoprotein.
       0.650
Saut_0079
COGs: COG0242 N-formylmethionyl-tRNA deformylase; InterPro IPR000181:IPR018195; KEGG: tdn:Suden_0618 formylmethionine deformylase; PFAM: formylmethionine deformylase; SPTR: B2UT38 Peptide deformylase; PFAM: Polypeptide deformylase.
       0.624
Saut_0078
COGs: COG2038 NaMN:DMB phosphoribosyltransferase; InterPro IPR003200; KEGG: tdn:Suden_0107 hypothetical protein; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; SPTR: Q0W8R5 Putative uncharacterized protein; PFAM: Phosphoribosyltransferase; TIGRFAM: conserved hypothetical protein TIGR00303.
       0.572
Saut_0083
Hypothetical protein.
       0.549
Saut_0084
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase; COGs: COG2200 FOG: EAL domain; InterPro IPR001633:IPR000160:IPR001789; KEGG: wsu:WS0806 hypothetical protein; PFAM: EAL domain protein; GGDEF domain containing protein; response regulator receiver; SMART: EAL domain protein; response regulator receiver; GGDEF domain containing protein; SPTR: A0YU61 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation; TIGRFAM: diguanylate cyclase; PFAM: EAL domain; Response regulator receiver domain; GGDEF domain; TIG [...]
       0.464
Saut_0077
COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR004090:IPR004089:IPR003660; KEGG: tdn:Suden_1178 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SPTR: A3UW61 Methyl-accepting chemotaxis protein; PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain.
       0.448
Your Current Organism:
Sulfurimonas autotrophica
NCBI taxonomy Id: 563040
Other names: S. autotrophica DSM 16294, Sulfurimonas autotrophica DSM 16294, Sulfurimonas autotrophica OK10, Sulfurimonas autotrophica str. DSM 16294, Sulfurimonas autotrophica strain DSM 16294
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