STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
cobDCobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. (280 aa)    
Predicted Functional Partners:
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
 
 
 0.996
Saut_0088
Aminotransferase class I and II; COGs: COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase; InterPro IPR004839; KEGG: gme:Gmet_0487 L-threonine O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; SPTR: O58115 328aa long hypothetical histidinol-phosphate aminotransferase; PFAM: Aminotransferase class I and II.
 
  
 0.994
Saut_0056
COGs: COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase; InterPro IPR003203; KEGG: tdn:Suden_0112 adenosylcobinamide kinase; PFAM: cobalbumin biosynthesis protein; PRIAM: Adenosylcobinamide-phosphate guanylyltransferase; SPTR: A0NQI2 Adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; PFAM: Cobinamide kinase / cobinamide phosphate guanyltransferase.
 
 
 0.990
cobS
Cobalamin 5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
 
  
 0.852
Saut_0089
Aminoglycoside phosphotransferase; COGs: COG2334 Putative homoserine kinase type II (protein kinase fold); InterPro IPR002575; KEGG: csa:Csal_0546 homoserine kinase; PFAM: aminoglycoside phosphotransferase; PFAM: Phosphotransferase enzyme family.
       0.792
Saut_0090
KEGG: tdn:Suden_0113 hypothetical protein.
       0.788
Saut_0087
KEGG: sun:SUN_1328 hypothetical protein; PFAM: Protein of unknown function, DUF255.
       0.773
Saut_0152
cob(II)yrinic acid a,c-diamide reductase; COGs: COG0778 Nitroreductase; InterPro IPR000415:IPR012825; KEGG: shl:Shal_0741 cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; SPTR: A3UL48 Nitroreductase family protein; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: Nitroreductase family; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase.
 
   
 0.565
Saut_0093
Periplasmic binding protein; COGs: COG4558 ABC-type hemin transport system periplasmic component; InterPro IPR002491; KEGG: tdn:Suden_0117 periplasmic binding protein; PFAM: periplasmic binding protein; SPTR: Q6D1Z3 Vitamin B12-binding protein; PFAM: Periplasmic binding protein.
 
     0.561
Saut_0091
COGs: COG0609 ABC-type Fe3+-siderophore transport system permease component; InterPro IPR000522:IPR001626; KEGG: tdn:Suden_0115 transport system permease protein; PFAM: transport system permease protein; ABC-3 protein; SPTR: A7I6Z3 Transport system permease protein; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
     
 0.505
Your Current Organism:
Sulfurimonas autotrophica
NCBI taxonomy Id: 563040
Other names: S. autotrophica DSM 16294, Sulfurimonas autotrophica DSM 16294, Sulfurimonas autotrophica OK10, Sulfurimonas autotrophica str. DSM 16294, Sulfurimonas autotrophica strain DSM 16294
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