STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saut_0138LmbE family protein; COGs: COG2120 conserved hypothetical protein LmbE homologs; InterPro IPR003737; KEGG: cla:Cla_1324 LmbE-like protein; PFAM: LmbE family protein; SPTR: A3W9N6 Putative LmbE-like protein; PFAM: GlcNAc-PI de-N-acetylase. (226 aa)    
Predicted Functional Partners:
Saut_0139
COGs: COG0223 Methionyl-tRNA formyltransferase; KEGG: cla:Cla_1323 conserved hypothetical protein, putative formyltransferase; SPTR: A3W9N7 GCN5-related N-acetyltransferase; PFAM: Formyl transferase.
 
    0.940
Saut_0140
Pseudaminic acid biosynthesis-associated protein PseG; COGs: COG3980 Spore coat polysaccharide biosynthesis protein predicted glycosyltransferase; InterPro IPR020023; KEGG: ccv:CCV52592_0563 putative flagellar protein; SPTR: Q58462 Uncharacterized protein MJ1062; TIGRFAM: pseudaminic acid biosynthesis-associated protein PseG; PFAM: Glycosyltransferase family 28 C-terminal domain; TIGRFAM: pseudaminic acid biosynthesis-associated protein PseG.
 
    0.843
Saut_0134
Acylneuraminate cytidylyltransferase; COGs: COG1861 Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase homolog; InterPro IPR003329; KEGG: dal:Dalk_0629 aminotransferase class-III; PFAM: acylneuraminate cytidylyltransferase; SPTR: A9A1R4 Acylneuraminate cytidylyltransferase; PFAM: Cytidylyltransferase.
 
     0.842
Saut_0135
COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR020471:IPR001395; KEGG: har:HEAR1122 putative oxidoreductases; PFAM: aldo/keto reductase; SPTR: A0Y160 Aldo/keto reductase; PFAM: Aldo/keto reductase family.
 
     0.825
Saut_0133
Aminotransferase class-III; COGs: COG0001 Glutamate-1-semialdehyde aminotransferase; InterPro IPR005814; KEGG: har:HEAR1123 putative bifunctionnal protein: glutamate-1-semialdehyde 2,1-aminomutase, 3-deoxy-manno-octulosonate cytidylyltransferase; PFAM: aminotransferase class-III; SPTR: A0Y151 Acylneuraminate cytidylyltransferase:Aminotransferase class-III; PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.817
Saut_0136
COGs: COG2089 Sialic acid synthase; InterPro IPR013132:IPR006190:IPR020030; KEGG: abu:Abu_2246 N-acetylneuraminic acid synthetase; PFAM: N-acetylneuraminic acid synthase domain; PRIAM: N-acylneuraminate-9-phosphate synthase; SPTR: A3UAY1 Sialic acid synthase; TIGRFAM: pseudaminic acid synthase; PFAM: NeuB family; TIGRFAM: pseudaminic acid synthase.
  
  
 0.817
Saut_0137
Pseudaminic acid biosynthesis N-acetyl transferase; InterPro IPR000182:IPR020036; KEGG: par:Psyc_0658 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; SPTR: A3UAY3 Flagellin modification protein FlmH; TIGRFAM: pseudaminic acid biosynthesis N-acetyl transferase; PFAM: Acetyltransferase (GNAT) family; TIGRFAM: pseudaminic acid biosynthesis N-acetyl transferase.
       0.803
Saut_0143
UDP-N-acetylglucosamine 4,6-dehydratase; COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR013120:IPR002225:IPR003869:IPR002198:IPR 001509:IPR020025; KEGG: abu:Abu_2243 UDP GlcNAc dehydratase/reductase PseB, putative; PFAM: polysaccharide biosynthesis protein CapD; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; SPTR: A0Y162 Polysaccharide biosynthesis protein; TIGRFAM: UDP-N-acetylglucosamine 4,6-dehydratase; PFAM: Polysaccharide biosynthesis protein; TIGRFAM: UDP-N-acet [...]
       0.783
Saut_0142
UDP-4-keto-6-deoxy-N-acetylglucosamine4-aminotra nsferase; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653:IPR001597:IPR000277:IPR020026; KEGG: ccv:CCV52592_0561 spore coat polysaccharide biosynthesis protein SpsC; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; SPTR: Q2FTQ4 DegT/DnrJ/EryC1/StrS aminotransferase; TIGRFAM: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase; PFAM: DegT [...]
       0.780
Saut_0141
Hypothetical protein; KEGG: ott:OTT_1762 RelA/SpoT-related protein.
       0.773
Your Current Organism:
Sulfurimonas autotrophica
NCBI taxonomy Id: 563040
Other names: S. autotrophica DSM 16294, Sulfurimonas autotrophica DSM 16294, Sulfurimonas autotrophica OK10, Sulfurimonas autotrophica str. DSM 16294, Sulfurimonas autotrophica strain DSM 16294
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