STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saut_0284COGs: COG3754 Lipopolysaccharide biosynthesis protein; KEGG: sml:Smlt0623 putative glycosyltransferase, fusion protein; SPTR: A2VSD5 Glycosyl transferase; PFAM: Rhamnan synthesis protein F. (284 aa)    
Predicted Functional Partners:
Saut_0282
COGs: COG3551 conserved hypothetical protein; InterPro IPR018054; KEGG: pla:Plav_3314 hypothetical protein; SPTR: A0Z0H0 Glycosyl transferase, family 2:Glycosyl transferase, group 1.
 
     0.781
Saut_0279
ABC-2 type transporter; COGs: COG1682 ABC-type polysaccharide/polyol phosphate export systems permease component; InterPro IPR013525:IPR000412; KEGG: fph:Fphi_1254 ABC-2 type transporter; PFAM: ABC-2 type transporter; SPTR: A2BD18 Wzm; PFAM: ABC-2 type transporter.
     
 0.770
Saut_0280
ABC transporter related protein; COGs: COG1134 ABC-type polysaccharide/polyol phosphate transport system ATPase component; InterPro IPR003439:IPR003593:IPR017871; KEGG: hch:HCH_02231 ABC-type polysaccharide/polyol phosphate transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: A0YLP0 ABC transporter, ATP-binding protein; PFAM: ABC transporter.
     
 0.767
Saut_0283
COGs: COG3754 Lipopolysaccharide biosynthesis protein; KEGG: nmu:Nmul_A1172 lipopolysaccharide biosynthesis protein-like; SPTR: A3V3Z9 Possible glycosyltransferase; PFAM: Rhamnan synthesis protein F.
 
    
0.759
Saut_0281
Sulfotransferase; InterPro IPR000863; KEGG: dat:HRM2_25330 putative 3-beta-hydroxysteroid sulfotransferase (phenol sulfotransferase); PFAM: sulfotransferase; SPTR: A0YNK8 Putative deacetylase sulfotransferase; PFAM: Sulfotransferase domain.
       0.733
Saut_0285
InterPro IPR001173; KEGG: sse:Ssed_2992 glycosyltransferase-like protein; PFAM: glycosyl transferase family 2; SPTR: A0NKF0 Rhamnosyltransferase; PFAM: Glycosyl transferase family 2.
  
  
 0.685
Saut_0286
Protein of unknown function DUF1972; InterPro IPR015393; KEGG: mfa:Mfla_2013 glycosyltransferase, RfaG; PFAM: Protein of unknown function DUF1972; SPTR: A3XR88 Glycosyltransferase-like; PFAM: Domain of unknown function (DUF1972).
  
  
 0.685
Saut_0287
Undecaprenyl-phosphate galactose phosphotransferase, WbaP; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR003362:IPR017475:IPR017472; KEGG: tdn:Suden_1700 undecaprenyl-phosphate galactosephosphotransferase; PFAM: sugar transferase; PRIAM: Undecaprenyl-phosphate galactose phosphotransferase; SPTR: A3ET31 Sugar transferase involved in lipopolysaccharide synthesis; TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; TIGRFAM: Undeca [...]
  
    0.676
Saut_0288
O-antigen polymerase; InterPro IPR007016; KEGG: sun:SUN_1947 hypothetical protein; PFAM: O-antigen polymerase; SPTR: A1ZI84 O-Antigen Polymerase family; PFAM: O-Antigen ligase.
  
    0.647
mnmE
tRNA modification GTPase trmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
   
    0.556
Your Current Organism:
Sulfurimonas autotrophica
NCBI taxonomy Id: 563040
Other names: S. autotrophica DSM 16294, Sulfurimonas autotrophica DSM 16294, Sulfurimonas autotrophica OK10, Sulfurimonas autotrophica str. DSM 16294, Sulfurimonas autotrophica strain DSM 16294
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.