STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saut_0379KEGG: abu:Abu_2333 hypothetical protein; SPTR: A3LKW5 Putative uncharacterized protein. (189 aa)    
Predicted Functional Partners:
Saut_2073
KEGG: tdn:Suden_0136 hypothetical protein; SPTR: Q9V0D7 Putative uncharacterized protein; PFAM: Archaea bacterial proteins of unknown function.
  
     0.690
Saut_1331
COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: tdn:Suden_0879 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: A3J1L0 Outer membrane efflux family protein, putative; PFAM: Outer membrane efflux protein.
  
     0.687
Saut_1870
KEGG: abu:Abu_0090 phosphate transport system regulatory protein PhoU, putative; SPTR: B9ZDV7 Phosphate uptake regulator, PhoU.
  
     0.634
Saut_1604
COGs: COG1466 DNA polymerase III delta subunit; InterPro IPR010372; KEGG: tdn:Suden_0542 DNA polymerase III subunit delta; PFAM: DNA polymerase III delta; SPTR: Q9ZJY0 Protein jhp_1168; PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit.
  
     0.619
Saut_1854
DUF234 DEXX-box ATPase; InterPro IPR004256; KEGG: tdn:Suden_1841 DUF234 DEXX-box ATPase; PFAM: DUF234 DEXX-box ATPase; SPTR: Q64E59 DEXX-box ATPase; PFAM: Archaea bacterial proteins of unknown function.
  
     0.617
Saut_0848
Globin; InterPro IPR001486; KEGG: abu:Abu_1553 hypothetical protein; PFAM: globin; SPTR: A7P5F9 Chromosome chr4 scaffold_6, whole genome shotgun sequence; PFAM: Bacterial-like globin.
  
     0.560
Saut_1294
FAD dependent oxidoreductase; COGs: COG0665 Glycine/D-amino acid oxidase (deaminating); InterPro IPR006076; KEGG: sun:SUN_1700 FAD dependent oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: Q5ZVA8 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein mnmC; PFAM: FAD dependent oxidoreductase; TIGRFAM: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain.
  
    0.550
Saut_2074
Protein of unknown function DUF1234; COGs: COG3545 esterase of the alpha/beta hydrolase fold; InterPro IPR010662; KEGG: tdn:Suden_0144 hypothetical protein; PFAM: protein of unknown function DUF1234; SPTR: A2V278 Putative uncharacterized protein; PFAM: Alpha/Beta hydrolase family of unknown function (DUF1234).
  
     0.522
Saut_2106
Tetratricopeptide repeat protein; InterPro IPR019734:IPR013026; KEGG: tdn:Suden_2026 TPR repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: A2V578 Putative uncharacterized protein; PFAM: Tetratricopeptide repeat; TIGRFAM: pentatricopeptide repeat domain (PPR motif).
  
     0.520
atpH
H+transporting two-sector ATPase delta (OSCP) subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family.
  
     0.516
Your Current Organism:
Sulfurimonas autotrophica
NCBI taxonomy Id: 563040
Other names: S. autotrophica DSM 16294, Sulfurimonas autotrophica DSM 16294, Sulfurimonas autotrophica OK10, Sulfurimonas autotrophica str. DSM 16294, Sulfurimonas autotrophica strain DSM 16294
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