STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saut_0574InterPro IPR013976; KEGG: tdn:Suden_1603 putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; PFAM: HDOD domain. (265 aa)    
Predicted Functional Partners:
Saut_0573
CheC domain protein; InterPro IPR007597; KEGG: tdn:Suden_1604 CheC, inhibitor of MCP methylation; PFAM: CheC domain protein; PFAM: CheC-like family.
       0.774
Saut_0572
COGs: COG0036 Pentose-5-phosphate-3-epimerase; InterPro IPR000056; KEGG: tdn:Suden_1605 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; PRIAM: Ribulose-phosphate 3-epimerase; SPTR: P56188 Ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase.
       0.680
Saut_0570
COGs: COG2176 DNA polymerase III alpha subunit (gram-positive type); InterPro IPR013520:IPR006055; KEGG: tdn:Suden_1607 DNA polymerase III subunit epsilon; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; SPTR: Q4L5W6 DNA polymerase III polC-type; PFAM: Exonuclease; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family.
       0.673
trpF
COGs: COG0135 Phosphoribosylanthranilate isomerase; InterPro IPR001240; KEGG: tdn:Suden_1606 phosphoribosylanthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); PRIAM: Phosphoribosylanthranilate isomerase; SPTR: A6QC86 N-(5'-phosphoribosyl)anthranilate isomerase; PFAM: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; Belongs to the TrpF family.
       0.643
rpmB
COGs: COG0227 Ribosomal protein L28; InterPro IPR001383; KEGG: tdn:Suden_1602 50S ribosomal protein L28; PFAM: ribosomal protein L28; SPTR: Q30Q52 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.546
argJ
N-acetylglutamate synthase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.
       0.505
Saut_0576
TrkA-N domain protein; COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR013099:IPR003148:IPR006037; KEGG: tdn:Suden_1601 hypothetical protein; PFAM: TrkA-N domain protein; Ion transport 2 domain protein; SPTR: A3ITQ7 Putative uncharacterized protein; PFAM: TrkA-N domain; Ion channel; TrkA-C domain.
       0.499
Saut_0386
COGs: COG0642 Signal transduction histidine kinase; InterPro IPR004358:IPR019494:IPR013702:IPR013656:IPR 013767:IPR003594:IPR003661:IPR013655:IPR008207:IPR001789:I PR001610:IPR000014:IPR000700:IPR005467; KEGG: gme:Gmet_1707 PAS/PAC sensor hybrid histidine kinase; PFAM: domain of unknown function DUF1745; FIST C domain; PAS fold-4 domain protein; PAS fold domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; Hpt domain protein; response regulator receiver; SMART: response regulator receiver; histidine kinase A domain prot [...]
   
 
 0.412
Your Current Organism:
Sulfurimonas autotrophica
NCBI taxonomy Id: 563040
Other names: S. autotrophica DSM 16294, Sulfurimonas autotrophica DSM 16294, Sulfurimonas autotrophica OK10, Sulfurimonas autotrophica str. DSM 16294, Sulfurimonas autotrophica strain DSM 16294
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