STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saut_0778MotA/TolQ/ExbB proton channel; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: tdn:Suden_1401 MotA/TolQ/ExbB proton channel; PFAM: MotA/TolQ/ExbB proton channel; SPTR: O25755 Putative biopolymer transport protein exbB-like 1; PFAM: MotA/TolQ/ExbB proton channel family. (188 aa)    
Predicted Functional Partners:
Saut_0779
Cell division and transport-associated protein TolR; COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: tdn:Suden_1400 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: O25754 Putative biopolymer transport protein exbD-like 1; PFAM: Biopolymer transport protein ExbD/TolR; (TC 2.C.1.2.1).
 
 
 0.993
Saut_0653
TonB system transport protein ExbD; COGs: COG0848 Biopolymer transport protein; InterPro IPR003400:IPR014171; KEGG: tdn:Suden_0628 biopolymer transport protein ExbD/TolR; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: P64101 Putative biopolymer transport protein exbD-like 2; TIGRFAM: TonB system transport protein ExbD; PFAM: Biopolymer transport protein ExbD/TolR; TIGRFAM: TonB system transport protein ExbD, group 2.
 
 
 0.962
Saut_0781
WD40 domain protein beta Propeller; COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659:IPR000276; KEGG: tdn:Suden_1398 translocation protein TolB; PFAM: WD40 domain protein beta Propeller; SPTR: Q7MA16 Protein tolB; PFAM: WD40-like Beta Propeller Repeat; TIGRFAM: tol-pal system beta propeller repeat protein TolB.
 
  
 0.932
Saut_0780
KEGG: tdn:Suden_1399 hypothetical protein.
  
 
 0.926
pal
OmpA/MotB domain protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
   
 0.848
atpC
ATP synthase F1 subcomplex epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
  
  
 0.834
atpD
ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
       0.754
Saut_0783
Tetratricopeptide TPR_2 repeat protein; COGs: COG1729 conserved hypothetical protein; InterPro IPR001440:IPR013105:IPR019734:IPR013026; KEGG: tdn:Suden_1396 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: P45955 Uncharacterized protein ybgF.
 
  
 0.745
atpG
ATP synthase F1 subcomplex gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
       0.739
Saut_0672
TonB family protein; InterPro IPR003538:IPR006260; KEGG: tdn:Suden_0644 TonB-like; SPTR: O25899 Protein tonB; TIGRFAM: TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
 
 
 0.732
Your Current Organism:
Sulfurimonas autotrophica
NCBI taxonomy Id: 563040
Other names: S. autotrophica DSM 16294, Sulfurimonas autotrophica DSM 16294, Sulfurimonas autotrophica OK10, Sulfurimonas autotrophica str. DSM 16294, Sulfurimonas autotrophica strain DSM 16294
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