STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saut_0799COGs: COG4096 Type I site-specific restriction-modification system R (restriction) subunit and related helicase; InterPro IPR007409:IPR013670:IPR006935:IPR014001:IPR 014021; KEGG: ftn:FTN_1155 type I restriction-modification system, subunit R (restriction); PFAM: type III restriction protein res subunit; EcoEI R domain protein; protein of unknown function DUF450; PRIAM: Type I site-specific deoxyribonuclease; SMART: DEAD-like helicase; SPTR: A3ENU4 Glutamate rich protein GrpB; PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Helicase conserved C-terminal domain; Type III [...] (770 aa)    
Predicted Functional Partners:
Saut_0803
N-6 DNA methylase; COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR002296:IPR003356:IPR002052; KEGG: ftn:FTN_1152 type I restriction-modification system, subunit M (methyltransferase); PFAM: N-6 DNA methylase; SPTR: A3ENU6 N-6 DNA Methylase family; PFAM: N-6 DNA Methylase; HsdM N-terminal domain.
 
 
 0.940
Saut_0805
Restriction modification system DNA specificity domain protein; COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: pay:PAU_03938 type I restriction enzyme ecobi specificity protein (s protein (s.ecobi); PFAM: restriction modification system DNA specificity domain; SPTR: Q46DQ9 Putative uncharacterized protein; PFAM: Type I restriction modification DNA specificity domain.
 
 
 0.904
Saut_0800
KEGG: hypothetical protein.
       0.689
Saut_0801
Hypothetical protein.
       0.689
Saut_0167
N-6 DNA methylase; COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR002296:IPR003356:IPR002052; KEGG: pha:PSHAa2094 type I restriction-modification system M subunit; PFAM: N-6 DNA methylase; SPTR: A3J918 N-6 DNA methylase; PFAM: N-6 DNA Methylase; HsdM N-terminal domain.
  
 
 0.647
Saut_1346
COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR002296:IPR003356:IPR002052:IPR004546; KEGG: wsu:WS1136 type I site-specific deoxyribonuclease; PFAM: N-6 DNA methylase; SPTR: Q12V00 Type I restriction-modification system, M subunit; TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM).
  
 
 0.647
Saut_0802
Filamentation induced by cAMP protein Fic; COGs: COG3177 conserved hypothetical protein; InterPro IPR003812; KEGG: abu:Abu_1071 hypothetical protein; PFAM: filamentation induced by cAMP protein Fic; SPTR: A1ZR76 MloA; PFAM: Fic/DOC family.
       0.528
Saut_0168
COGs: COG0732 Restriction endonuclease S subunits; KEGG: lhk:LHK_01517 type I restriction-modification system, S subunit; SPTR: Q8PSU8 Type I restriction-modification system specificity subunit; PFAM: Type I restriction modification DNA specificity domain.
  
 
 0.483
Saut_1345
Restriction modification system DNA specificity domain protein; COGs: COG0732 Restriction endonuclease S subunits; InterPro IPR000055; KEGG: ftn:FTN_0707 type I restriction-modification system, subunit S; PFAM: restriction modification system DNA specificity domain; SPTR: Q12V01 Restriction modification system DNA specificity subunit; PFAM: Type I restriction modification DNA specificity domain.
  
 
 0.483
Your Current Organism:
Sulfurimonas autotrophica
NCBI taxonomy Id: 563040
Other names: S. autotrophica DSM 16294, Sulfurimonas autotrophica DSM 16294, Sulfurimonas autotrophica OK10, Sulfurimonas autotrophica str. DSM 16294, Sulfurimonas autotrophica strain DSM 16294
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