STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saut_1026Hypothetical protein; KEGG: sun:SUN_2452 phage integrase family site specific recombinase; PFAM: Phage integrase family; Belongs to the 'phage' integrase family. (377 aa)    
Predicted Functional Partners:
Saut_1027
Filamentation induced by cAMP protein Fic; COGs: COG3177 conserved hypothetical protein; InterPro IPR000485:IPR003812; KEGG: sbp:Sbal223_3472 filamentation induced by cAMP protein Fic; PFAM: filamentation induced by cAMP protein Fic; SPTR: A2UW09 Filamentation induced by cAMP protein Fic; PFAM: Fic/DOC family.
 
     0.598
Saut_2144
WD-40 repeat protein; InterPro IPR001680:IPR017986; KEGG: tdn:Suden_2084 WD-40 repeat-containing protein; SMART: WD-40 repeat protein; SPTR: B7XHH4 Coatomer alpha subunit; PFAM: WD domain, G-beta repeat.
  
     0.516
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
  
 0.449
Saut_0294
COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR020471:IPR001395; KEGG: tdn:Suden_0329 oxidoreductase like protein; PFAM: aldo/keto reductase; SPTR: B9LNV3 Aldo/keto reductase; PFAM: Aldo/keto reductase family.
  
     0.432
Saut_1090
WD40 repeat, subgroup; COGs: COG2319 FOG: WD40 repeat; InterPro IPR019781:IPR001680:IPR019775:IPR019782:IPR 017986; KEGG: tdn:Suden_1142 WD-40 repeat-containing protein; PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat protein; SPTR: A0C273 Chromosome undetermined scaffold_144, whole genome shotgun sequence; PFAM: WD domain, G-beta repeat.
  
     0.423
Saut_1369
Outer membrane efflux protein; InterPro IPR003423; KEGG: tdn:Suden_1253 hypothetical protein; PFAM: outer membrane efflux protein; SPTR: A2TXB3 Outer membrane efflux protein; PFAM: Outer membrane efflux protein.
  
     0.414
Saut_1608
Transformation system protein; COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR002375; KEGG: tdn:Suden_1638 transformation system protein; PFAM: Phosphoribosyl transferase domain.
   
    0.412
Your Current Organism:
Sulfurimonas autotrophica
NCBI taxonomy Id: 563040
Other names: S. autotrophica DSM 16294, Sulfurimonas autotrophica DSM 16294, Sulfurimonas autotrophica OK10, Sulfurimonas autotrophica str. DSM 16294, Sulfurimonas autotrophica strain DSM 16294
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