STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saut_1108Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). (171 aa)    
Predicted Functional Partners:
Saut_1110
Protein of unknown function DUF214; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: tdn:Suden_1044 hypothetical protein; PFAM: protein of unknown function DUF214; SPTR: A3EV71 ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 
 
 0.741
Saut_0954
Putative transcriptional acitvator, Baf family; COGs: COG1521 Putative transcriptional regulator protein; InterPro IPR004619; KEGG: tdn:Suden_0888 pantothenate kinase; PFAM: Bvg accessory factor; PRIAM: Pantothenate kinase; SPTR: Q30S65 Type III pantothenate kinase; TIGRFAM: transcriptional activator, Baf family; PFAM: Bordetella pertussis Bvg accessory factor family; TIGRFAM: pantothenate kinase, type III.
  
   
 0.727
Saut_1608
Transformation system protein; COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR002375; KEGG: tdn:Suden_1638 transformation system protein; PFAM: Phosphoribosyl transferase domain.
 
     0.726
Saut_0742
Conserved hypothetical protein; COGs: COG2404 phosphohydrolase (DHH superfamily); KEGG: tdn:Suden_0723 hypothetical protein; SPTR: A3ID49 YngD.
  
     0.724
Saut_1797
COGs: COG4105 DNA uptake lipoprotein; KEGG: tdn:Suden_0413 DNA uptake lipoprotein-like; TIGRFAM: outer membrane assembly lipoprotein YfiO.
 
   
 0.717
Saut_0741
COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: tdn:Suden_0722 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; PRIAM: N-acetylmuramoyl-L-alanine amidase; SMART: cell wall hydrolase/autolysin; SPTR: A3LJH4 N-acetylmuramoyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase.
    
   0.693
Saut_1287
Permease YjgP/YjgQ family protein; COGs: COG0795 permease; InterPro IPR005495; KEGG: tdn:Suden_0995 permease YjgP/YjgQ; PFAM: permease YjgP/YjgQ family protein; SPTR: A0Z250 Predicted Permease; PFAM: Predicted permease YjgP/YjgQ family.
 
     0.668
Saut_1967
Protein of unknown function DUF507; COGs: COG2952 conserved hypothetical protein; InterPro IPR007463; KEGG: tdn:Suden_0079 hypothetical protein; PFAM: protein of unknown function DUF507; PFAM: Protein of unknown function (DUF507).
  
     0.661
Saut_1667
KEGG: tdn:Suden_0525 hypothetical protein.
  
     0.660
Saut_1925
InterPro IPR010432; KEGG: tdn:Suden_1918 RDD protein; PFAM: RDD domain containing protein; SPTR: A3GUL7 RDD family, putative; PFAM: RDD family.
  
     0.639
Your Current Organism:
Sulfurimonas autotrophica
NCBI taxonomy Id: 563040
Other names: S. autotrophica DSM 16294, Sulfurimonas autotrophica DSM 16294, Sulfurimonas autotrophica OK10, Sulfurimonas autotrophica str. DSM 16294, Sulfurimonas autotrophica strain DSM 16294
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.