STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saut_1135Extracellular solute-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (377 aa)    
Predicted Functional Partners:
Saut_0946
TRAP dicarboxylate transporter, DctM subunit; COGs: COG4664 TRAP-type mannitol/chloroaromatic compound transport system large permease component; InterPro IPR010656:IPR004681; KEGG: tdn:Suden_1204 TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; SPTR: A3J8S7 Putative uncharacterized protein; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
 
  
 0.826
Saut_0945
Tripartite ATP-independent periplasmic transporter DctQ component; COGs: COG4665 TRAP-type mannitol/chloroaromatic compound transport system small permease component; InterPro IPR007387; KEGG: tdn:Suden_1205 tripartite ATP-independent periplasmic transporter DctQ; PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; SPTR: A3EMT0 Putative uncharacterized protein; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
 
  
 0.811
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.734
Saut_1134
KEGG: tdn:Suden_1066 hypothetical protein.
       0.698
Saut_1136
COGs: COG1306 conserved hypothetical protein; KEGG: tdn:Suden_1068 hypothetical protein; SPTR: A2WJ27 Putative uncharacterized protein.
       0.602
fbp
D-fructose 1,6-bisphosphatase; COGs: COG0158 Fructose-1 6-bisphosphatase; InterPro IPR000146:IPR013838; KEGG: tdn:Suden_1063 fructose-1,6-bisphosphatase; PFAM: Inositol phosphatase/fructose-16-bisphosphatase; PRIAM: Fructose-bisphosphatase; SPTR: Q30RP0 Fructose-1,6-bisphosphatase class 1; PFAM: Fructose-1-6-bisphosphatase.
       0.532
Saut_1132
KEGG: tdn:Suden_1064 hypothetical protein.
       0.532
Saut_1130
COGs: COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein; InterPro IPR004435; KEGG: tdn:Suden_1062 molybdopterin-guanine dinucleotide biosynthesis MobB region; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; SPTR: P44902 Molybdopterin-guanine dinucleotide biosynthesis protein B; TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: Molybdopterin guanine dinucleotide synthesis protein B; TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein MobB.
       0.522
Your Current Organism:
Sulfurimonas autotrophica
NCBI taxonomy Id: 563040
Other names: S. autotrophica DSM 16294, Sulfurimonas autotrophica DSM 16294, Sulfurimonas autotrophica OK10, Sulfurimonas autotrophica str. DSM 16294, Sulfurimonas autotrophica strain DSM 16294
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