Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Saut_1237COGs: COG1514 2'-5' RNA ligase; KEGG: nis:NIS_1595 2'-5' RNA ligase; SPTR: A3K2S8 2',5' RNA ligase; TIGRFAM: 2'-5' RNA ligase. (170 aa)    
Predicted Functional Partners:
Saut_1238
Protein of unknown function DUF82; COGs: COG1656 conserved hypothetical protein; InterPro IPR002782; KEGG: nis:NIS_0282 hypothetical protein; PFAM: protein of unknown function DUF82; SPTR: B5IDS3 Putative uncharacterized protein; PFAM: Protein of unknown function DUF82.
       0.559
bioD
Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
  
  
 0.431
Saut_1239
KEGG: hypothetical protein LOC100039738.
       0.429
ispDF
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D- erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4- diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C- methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF).
       0.407
Saut_1023
Sulfite dehydrogenase (cytochrome) subunit SorB; KEGG: sun:SUN_1103 sulfite:cytochrome c oxidoreductase subunit B; SPTR: A3WSX3 Cytochrome c oxidoreductase subunit B.
  
     0.406
Your Current Organism:
Sulfurimonas autotrophica
NCBI taxonomy Id: 563040
Other names: S. autotrophica DSM 16294, Sulfurimonas autotrophica DSM 16294, Sulfurimonas autotrophica OK10, Sulfurimonas autotrophica str. DSM 16294, Sulfurimonas autotrophica strain DSM 16294
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