STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saut_1290KEGG: nis:NIS_1299 hypothetical protein. (269 aa)    
Predicted Functional Partners:
Saut_1289
Nitrogen-fixing NifU domain protein; InterPro IPR002871; KEGG: tdn:Suden_0148 hypothetical protein; PFAM: nitrogen-fixing NifU domain protein; SPTR: O67045 NifU-like protein; PFAM: NifU-like N terminal domain.
  
    0.792
Saut_1403
Rubrerythrin; COGs: COG1592 Rubrerythrin; InterPro IPR003251:IPR004462:IPR004039:IPR009040; KEGG: sun:SUN_1880 rubrerythrin; PFAM: Rubrerythrin; Desulfoferrodoxin Dfx domain protein; SPTR: O26850 Rubrerythrin; PFAM: Desulfoferrodoxin, N-terminal domain; Rubrerythrin; TIGRFAM: desulfoferrodoxin FeS4 iron-binding domain.
  
  
 0.482
Saut_1285
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
       0.459
Saut_1284
Phosphopantothenoylcysteine decarboxylase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
       0.433
Saut_1286
Peptidase A24A domain protein; COGs: COG1989 Type II secretory pathway prepilin signal peptidase PulO and related peptidase; InterPro IPR010627:IPR000045; KEGG: tdn:Suden_0996 peptidase A24A-like; PFAM: peptidase A24A domain protein; peptidase A24A prepilin type IV; SPTR: A1HQ20 Peptidase A24A domain protein; PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family.
       0.433
Saut_1287
Permease YjgP/YjgQ family protein; COGs: COG0795 permease; InterPro IPR005495; KEGG: tdn:Suden_0995 permease YjgP/YjgQ; PFAM: permease YjgP/YjgQ family protein; SPTR: A0Z250 Predicted Permease; PFAM: Predicted permease YjgP/YjgQ family.
       0.433
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.433
Your Current Organism:
Sulfurimonas autotrophica
NCBI taxonomy Id: 563040
Other names: S. autotrophica DSM 16294, Sulfurimonas autotrophica DSM 16294, Sulfurimonas autotrophica OK10, Sulfurimonas autotrophica str. DSM 16294, Sulfurimonas autotrophica strain DSM 16294
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