STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saut_1362COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107:IPR002104; KEGG: tdn:Suden_1247 phage integrase; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: A1HTQ3 Tyrosine recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; Belongs to the 'phage' integrase family. (275 aa)    
Predicted Functional Partners:
Saut_1363
KEGG: tdn:Suden_1248 hypothetical protein; SPTR: Q9ZKY5 Plasminogen-binding protein pgbB.
       0.798
Saut_1364
KEGG: tdn:Suden_1249 hypothetical protein.
       0.797
Saut_1361
InterPro IPR006674:IPR003607; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; PFAM: HD domain.
       0.773
Saut_1105
DNA translocase FtsK; COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR018541:IPR002543:IPR003593; KEGG: tdn:Suden_1038 cell divisionFtsK/SpoIIIE; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase; SPTR: A1VZM0 DNA translocase ftsK; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; Belongs to the FtsK/SpoIIIE/SftA family.
  
   
 0.750
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
 
  
 0.563
Saut_1359
COGs: COG2836 conserved hypothetical protein; KEGG: tdn:Suden_1245 hypothetical protein; SPTR: A0YZN7 Putative uncharacterized protein.
       0.556
Saut_1360
KEGG: abu:Abu_1098 hypothetical protein.
       0.556
gatC
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
       0.549
Saut_1366
COGs: COG1393 Arsenate reductase and related protein glutaredoxin family; InterPro IPR006660:IPR006504; KEGG: nis:NIS_1048 hypothetical protein; PFAM: arsenate reductase and related; SPTR: P44515 Uncharacterized protein HI0103; PFAM: ArsC family; TIGRFAM: conserved hypothetical protein; Belongs to the ArsC family.
       0.532
Saut_1367
Twitching motility protein; COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR001482:IPR006321; KEGG: tdn:Suden_1251 pilus retraction protein PilT; PFAM: type II secretion system protein E; SPTR: A0Y2H7 Twitching motility protein PilT (Type IV pili); TIGRFAM: twitching motility protein; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT.
       0.532
Your Current Organism:
Sulfurimonas autotrophica
NCBI taxonomy Id: 563040
Other names: S. autotrophica DSM 16294, Sulfurimonas autotrophica DSM 16294, Sulfurimonas autotrophica OK10, Sulfurimonas autotrophica str. DSM 16294, Sulfurimonas autotrophica strain DSM 16294
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