STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saut_1616TPR repeat-containing protein; InterPro IPR001440:IPR002035:IPR019734:IPR013026; KEGG: sun:SUN_2406 von Willebrand factor type A domain-containing protein; PFAM: TPR repeat-containing protein; von Willebrand factor type A; SMART: von Willebrand factor type A; Tetratricopeptide repeat; SPTR: A2V1A4 TPR repeat; PFAM: Tetratricopeptide repeat. (521 aa)    
Predicted Functional Partners:
Saut_1615
InterPro IPR002035; KEGG: sun:SUN_2407 von Willebrand factor type A domain-containing protein; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: A2V1A5 Von Willebrand factor, type A; PFAM: von Willebrand factor type A domain.
 
    
0.846
Saut_0961
COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); KEGG: sun:SUN_2005 hypothetical protein; SPTR: A3U5K4 Putative uncharacterized protein; PFAM: Protein of unknown function DUF58.
 
  
 0.793
Saut_0680
Protein of unknown function DUF58; COGs: COG1721 conserved hypothetical protein (some members contain a von Willebrand factor type A (vWA) domain); InterPro IPR002881; KEGG: tdn:Suden_0654 hypothetical protein; PFAM: protein of unknown function DUF58; SPTR: A3U5K4 Putative uncharacterized protein; PFAM: Protein of unknown function DUF58.
 
  
 0.792
Saut_1617
KEGG: sun:SUN_2405 hypothetical protein.
     
 0.782
Saut_0963
InterPro IPR002035; KEGG: sun:SUN_2003 von Willebrand factor type A domain-containing protein; PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: A3UND6 Von Willebrand factor type A domain protein; PFAM: von Willebrand factor type A domain.
 
     0.776
Saut_1614
COGs: COG2863 Cytochrome c553; InterPro IPR003088:IPR009056; KEGG: tdn:Suden_0904 cytochrome c, class I; PFAM: cytochrome c class I; SPTR: A0Y250 Cytochrome c4; PFAM: Cytochrome c.
 
     0.642
Your Current Organism:
Sulfurimonas autotrophica
NCBI taxonomy Id: 563040
Other names: S. autotrophica DSM 16294, Sulfurimonas autotrophica DSM 16294, Sulfurimonas autotrophica OK10, Sulfurimonas autotrophica str. DSM 16294, Sulfurimonas autotrophica strain DSM 16294
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