STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saut_1807KEGG: tdn:Suden_1862 hypothetical protein. (159 aa)    
Predicted Functional Partners:
Saut_1806
Protein of unknown function DUF89; COGs: COG1578 conserved hypothetical protein; InterPro IPR002791; KEGG: tdn:Suden_1861 hypothetical protein; PFAM: protein of unknown function DUF89; SPTR: Q649E9 Putative uncharacterized protein; PFAM: Protein of unknown function DUF89.
       0.803
Saut_1805
KEGG: nam:NAMH_1021 hypothetical protein.
       0.773
purE
5-(carboxyamino)imidazole ribonucleotide mutase; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
       0.737
glyQ
COGs: COG0752 Glycyl-tRNA synthetase alpha subunit; InterPro IPR002310:IPR006194; KEGG: tdn:Suden_1857 glycyl-tRNA synthetase subunit alpha; PFAM: glycyl-tRNA synthetase alpha subunit; PRIAM: Glycine--tRNA ligase; SPTR: Q30PF0 Glycyl-tRNA synthetase alpha subunit; TIGRFAM: glycyl-tRNA synthetase, alpha subunit; PFAM: Glycyl-tRNA synthetase alpha subunit; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, alpha subunit.
       0.676
Saut_1809
Collagenase; COGs: COG0826 Collagenase and related protease; InterPro IPR001539; KEGG: tdn:Suden_1864 peptidase U32; PFAM: peptidase U32; SPTR: Q9ZMR3 Uncharacterized protease jhp_0155; PFAM: Peptidase family U32.
       0.646
Saut_1810
KEGG: tdn:Suden_1865 hypothetical protein.
       0.646
Saut_1811
COGs: COG1387 Histidinol phosphatase and related hydrolase of the PHP family; InterPro IPR004013:IPR010140; KEGG: tdn:Suden_1866 histidinol phosphate phosphatase, HisJ; PFAM: PHP domain protein; SPTR: Q9RX45 Probable histidinol-phosphatase; TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain; TIGRFAM: histidinol phosphate phosphatase HisJ family; Belongs to the PHP hydrolase family. HisK subfamily.
       0.501
Saut_1803
COGs: COG1200 RecG-like helicase; InterPro IPR011545:IPR001650:IPR006935:IPR014001:IPR 014021; KEGG: tdn:Suden_0406 DEAD/DEAH box helicase-like; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein; SPTR: Q9ZJA1 ATP-dependent DNA helicase recG; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecG.
       0.463
Your Current Organism:
Sulfurimonas autotrophica
NCBI taxonomy Id: 563040
Other names: S. autotrophica DSM 16294, Sulfurimonas autotrophica DSM 16294, Sulfurimonas autotrophica OK10, Sulfurimonas autotrophica str. DSM 16294, Sulfurimonas autotrophica strain DSM 16294
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