STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Saut_1960KEGG: tdn:Suden_0086 3-dehydroquinate dehydratase. (238 aa)    
Predicted Functional Partners:
Saut_1958
Conserved hypothetical protein; COGs: COG3893 Inactivated superfamily I helicase; KEGG: tdn:Suden_0088 hypothetical protein; SPTR: A3I1C0 Putative uncharacterized protein.
     
 0.869
Saut_1956
UvrD/REP helicase; COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR000212:IPR014016:IPR014017; KEGG: tdn:Suden_0090 UvrD/REP helicase; PFAM: UvrD/REP helicase; SPTR: A3XQM7 Putative helicase; PFAM: UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
       0.803
Saut_1959
KEGG: tdn:Suden_0087 hypothetical protein; PFAM: FixH.
       0.803
Saut_1957
KEGG: tdn:Suden_0398 hypothetical protein.
       0.773
Saut_1961
KEGG: tdn:Suden_0085 hypothetical protein.
     
 0.583
Saut_1962
Cytochrome c class I; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
       0.579
Saut_1963
InterPro IPR014107; KEGG: tdn:Suden_0083 cbb3-type cytochrome c oxidase subunit IV; PFAM: Cytochrome c oxidase cbb3-type CcoQ; PFAM: Cbb3-type cytochrome oxidase component FixQ; TIGRFAM: cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial.
       0.579
Saut_1964
COGs: COG2993 Cbb3-type cytochrome oxidase cytochrome c subunit; InterPro IPR003468:IPR009056; KEGG: tdn:Suden_0082 cbb3-type cytochrome c oxidase subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; SPTR: A3HZP0 Probable cytochrome oxidase subunit (Cbb3-type); TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: Cytochrome C oxidase, mono-heme subunit/FixO; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II.
       0.562
Saut_1955
KEGG: sun:SUN_2237 hypothetical protein; PFAM: Protein of unknown function (DUF1566).
       0.554
Saut_1965
COGs: COG3278 Cbb3-type cytochrome oxidase subunit 1; InterPro IPR000883:IPR004677; KEGG: tdn:Suden_0081 cytochrome c oxidase cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; PRIAM: Cytochrome-c oxidase; SPTR: A1ZN78 Cytochrome c oxidase, Cbb3-type, subunit I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
       0.539
Your Current Organism:
Sulfurimonas autotrophica
NCBI taxonomy Id: 563040
Other names: S. autotrophica DSM 16294, Sulfurimonas autotrophica DSM 16294, Sulfurimonas autotrophica OK10, Sulfurimonas autotrophica str. DSM 16294, Sulfurimonas autotrophica strain DSM 16294
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