STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Saut_2012Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterPro IPR013655:IPR001633:IPR000160:IPR013767:IPR 001610:IPR000014:IPR000700; KEGG: sun:SUN_1626 signal transduction protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein; SPTR: A3LI29 Putative uncharacterized protein; TIGRFAM: diguanylate cy [...] (947 aa)    
Predicted Functional Partners:
Saut_0386
COGs: COG0642 Signal transduction histidine kinase; InterPro IPR004358:IPR019494:IPR013702:IPR013656:IPR 013767:IPR003594:IPR003661:IPR013655:IPR008207:IPR001789:I PR001610:IPR000014:IPR000700:IPR005467; KEGG: gme:Gmet_1707 PAS/PAC sensor hybrid histidine kinase; PFAM: domain of unknown function DUF1745; FIST C domain; PAS fold-4 domain protein; PAS fold domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; Hpt domain protein; response regulator receiver; SMART: response regulator receiver; histidine kinase A domain prot [...]
  
 
0.940
Saut_0004
Diguanylate cyclase/phosphodiesterase; COGs: COG2200 FOG: EAL domain; InterPro IPR001633:IPR000160; KEGG: cff:CFF8240_0004 diguanylate cyclase/phosphodiesterase, putative; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; SPTR: A0Y5Z9 Sensory box protein; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
 
 0.884
Saut_1351
Diguanylate cyclase/phosphodiesterase; COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterPro IPR001633:IPR000160; KEGG: tdn:Suden_0735 diguanylate cyclase/phosphodiesterase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; SPTR: A0NU37 Putative sensory box/GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
 
0.840
Saut_2013
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); COGs: COG2200 FOG: EAL domain; InterPro IPR013655:IPR001633:IPR000160:IPR007892; KEGG: nis:NIS_0567 hypothetical protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; CHASE4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; SPTR: A0XY04 Sensory box/GGDEF/EAL domain protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain; GGDEF domain; CHASE4 domain; PAS fold; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; [...]
 
 
0.832
Saut_2011
COGs: COG1858 Cytochrome c peroxidase; InterPro IPR004852:IPR009056:IPR011031; KEGG: sun:SUN_1627 cytochrome c peroxidase; PFAM: Di-haem cytochrome c peroxidase; PRIAM: Cytochrome-c peroxidase; SPTR: P37197 Probable cytochrome c peroxidase; PFAM: Cytochrome c; Di-haem cytochrome c peroxidase.
       0.775
Saut_0791
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); COGs: COG2200 FOG: EAL domain; InterPro IPR013655:IPR001633:IPR000160:IPR013767:IPR 001610:IPR000014:IPR000700:IPR001789; KEGG: tdn:Suden_2101 response regulator receiver/GGDEF/PAS/PAC domain-containing protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; SPTR: A0XXT6 Putative orphan protein; putative EAL domain; TIGRFAM: PAS sensor [...]
 
 
0.768
Saut_1540
Hpt sensor hybrid histidine kinase; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR004358:IPR008207:IPR001789:IPR003594:IPR 003661:IPR005467; KEGG: tdn:Suden_0617 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SPTR: A3WN98 Sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; H [...]
 
 
 0.759
Saut_1664
Diguanylate cyclase/phosphodiesterase; COGs: COG2200 FOG: EAL domain; InterPro IPR001633:IPR019494:IPR013702:IPR000160; KEGG: wsu:WS0108 GGDEF family protein; PFAM: EAL domain protein; FIST C domain; domain of unknown function DUF1745; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; SPTR: A3UXP0 GGDEF family protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain; FIST C domain; GGDEF domain; FIST N domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
 
0.752
Saut_0068
Signal transduction histidine kinase with CheB and CheR activity; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterPro IPR004358:IPR000780:IPR013655:IPR000673:IPR 013656:IPR003594:IPR013767:IPR003661:IPR001610:IPR000014:I PR000700:IPR002052:IPR005467; KEGG: nis:NIS_1076 two-component sensor histidine kinase; PFAM: MCP methyltransferase CheR-type; PAS fold-3 domain protein; CheB methylesterase; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: MCP methyltransferase CheR-type; PAC re [...]
 
 
 0.691
Saut_1841
Diguanylate cyclase/phosphodiesterase; COGs: COG2200 FOG: EAL domain; InterPro IPR001633:IPR000160; KEGG: tdn:Suden_1358 diguanylate cyclase/phosphodiesterase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; SPTR: A3WK81 Signaling protein; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
 
0.668
Your Current Organism:
Sulfurimonas autotrophica
NCBI taxonomy Id: 563040
Other names: S. autotrophica DSM 16294, Sulfurimonas autotrophica DSM 16294, Sulfurimonas autotrophica OK10, Sulfurimonas autotrophica str. DSM 16294, Sulfurimonas autotrophica strain DSM 16294
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