STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL13785.1NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. (275 aa)    
Predicted Functional Partners:
SDL46691.1
Glutamate synthase (NADH) large subunit.
     
 0.787
SDL60230.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.770
fabZ
3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
  
 0.754
SDM66123.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
   
 0.753
SDM89217.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
   
 0.753
SDL13762.1
Ferritin-like metal-binding protein YciE.
 
     0.743
SDL13721.1
Bifunctional non-homologous end joining protein LigD.
 
     0.734
SDL28205.1
Acyl transferase domain-containing protein; Belongs to the P-Pant transferase superfamily.
  
 0.692
SDL28236.1
Polyketide-type polyunsaturated fatty acid synthase PfaA.
  
 0.691
SDM87020.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
  
 0.585
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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