STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL16649.1Por secretion system C-terminal sorting domain-containing protein. (797 aa)    
Predicted Functional Partners:
SDL86992.1
TIGR01244 family protein.
   
 
 0.999
SDM02095.1
NADH dehydrogenase subunit M.
    
 
 0.970
SDM61057.1
NADH dehydrogenase subunit M.
    
 
 0.970
SDL48542.1
Sulfate permease, MFS superfamily.
    
   0.920
SDL82782.1
Sulfate permease, SulP family.
    
   0.920
SDL78235.1
Hypothetical protein.
  
 
  0.910
SDM56958.1
WD-40 repeat-containing protein.
  
 
 0.898
SDL42466.1
WD domain, G-beta repeat.
    
 0.880
SDM23451.1
Protein of unknown function.
    
 0.880
SDM57321.1
Por secretion system C-terminal sorting domain-containing protein.
  
 0.876
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.