STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL17107.1Two component transcriptional regulator, LytTR family. (251 aa)    
Predicted Functional Partners:
SDL17128.1
Histidine kinase.
 
  0.957
SDM79864.1
7TM diverse intracellular signalling.
  
  0.834
SDL15508.1
Histidine kinase.
  
  0.819
SDL58672.1
Histidine kinase.
  
  0.819
SDL18295.1
Histidine kinase.
  
  0.818
SDL24484.1
Histidine kinase.
  
  0.818
SDL99423.1
Histidine kinase.
  
  0.818
SDL54170.1
Ligand-binding sensor domain-containing protein.
  
 
  0.816
SDL18032.1
Histidine kinase.
  
   0.812
SDN10241.1
Histidine kinase.
  
   0.812
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.