STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL39892.1Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain. (673 aa)    
Predicted Functional Partners:
SDL18953.1
Starch-binding associating with outer membrane.
  
     0.623
SDL39814.1
Starch-binding associating with outer membrane.
 
     0.606
SDM66941.1
Starch-binding associating with outer membrane.
  
     0.587
SDM66913.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.572
SDL18619.1
Hypothetical protein.
 
      0.554
SDL29086.1
Starch-binding associating with outer membrane.
  
     0.553
SDL39800.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.525
SDL27386.1
Arylsulfatase A.
  
 
   0.520
SDL18978.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.519
SDN08088.1
Arylsulfatase A.
  
 
   0.493
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.