STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL48768.1Predicted arabinose efflux permease, MFS family. (395 aa)    
Predicted Functional Partners:
SDL27160.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
 
      0.587
SDL48805.1
Poly(3-hydroxybutyrate) depolymerase.
       0.586
SDL48835.1
Predicted N-acyltransferase, GNAT family.
       0.586
SDM06844.1
Ferredoxin-nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
     
 0.551
SDM71958.1
Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor.
     
 0.551
SDL57153.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.518
SDL48737.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.506
SDL45371.1
Chorismate mutase.
   
 
 0.441
SDL48873.1
Addiction module antidote protein, HigA family.
       0.430
SDL48904.1
Nucleotidyl transferase AbiEii toxin, Type IV TA system.
       0.430
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.