STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL52420.1Agmatine deiminase; Belongs to the agmatine deiminase family. (345 aa)    
Predicted Functional Partners:
SDL52712.1
N-carbamoylputrescine amidase.
 
 0.993
SDL73399.1
Arginine decarboxylase.
    
 0.908
SDL19375.1
Predicted amidohydrolase.
 
 
 0.861
SDL52346.1
Hypothetical protein.
       0.774
SDL52379.1
Hypothetical protein.
       0.773
SDL52312.1
Peptidyl-prolyl cis-trans isomerase SurA.
       0.563
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.549
SDM47123.1
Carboxynorspermidine decarboxylase.
    
 0.549
SDL52451.1
Protein of unknown function.
       0.526
SDL52491.1
DNA polymerase III, psi subunit.
       0.526
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.