STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL53522.1Hypothetical protein. (750 aa)    
Predicted Functional Partners:
SDL53557.1
Protein of unknown function.
 
     0.950
SDL53637.1
Hypothetical protein.
 
     0.947
SDL53594.1
TonB-dependent Receptor Plug Domain.
 
     0.944
SDM97013.1
Hypothetical protein.
  
   0.704
SDM35251.1
Hypothetical protein.
  
     0.579
SDM67353.1
TonB protein C-terminal.
  
   0.545
SDL53479.1
Penicillin amidase.
       0.543
SDM24901.1
Hypothetical protein.
  
   0.543
SDM07595.1
Outer membrane transport energization protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
   0.508
SDM56339.1
TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region.
  
     0.507
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.