STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL53637.1Hypothetical protein. (239 aa)    
Predicted Functional Partners:
SDL53557.1
Protein of unknown function.
 
     0.952
SDL53594.1
TonB-dependent Receptor Plug Domain.
 
     0.952
SDL53522.1
Hypothetical protein.
 
     0.947
SDM88670.1
HEAT repeat-containing protein.
  
     0.577
SDL53479.1
Penicillin amidase.
       0.530
SDM88636.1
Hypothetical protein.
  
     0.518
SDM06945.1
Protein of unknown function.
 
     0.492
SDM17224.1
Hypothetical protein.
  
     0.479
SDL51954.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.461
SDM97499.1
Hypothetical protein.
  
     0.460
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.