STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL54071.1Hypothetical protein. (303 aa)    
Predicted Functional Partners:
SDL54105.1
Hypothetical protein.
 
    
0.724
SDL54136.1
Por secretion system C-terminal sorting domain-containing protein.
       0.694
SDL46441.1
Hypothetical protein.
 
 
   0.642
SDL54170.1
Ligand-binding sensor domain-containing protein.
       0.587
SDL54205.1
Two component transcriptional regulator, LytTR family.
       0.587
SDL56409.1
DNA sulfur modification protein DndE; Belongs to the glycosyl hydrolase 28 family.
    
  0.573
SDL54430.1
Cytochrome c.
    
  0.550
SDL53919.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.513
SDM87305.1
Por secretion system C-terminal sorting domain-containing protein.
  
 
   0.508
SDL54027.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
 
     0.501
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.