STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL55402.1Protein of unknown function DUF58. (301 aa)    
Predicted Functional Partners:
SDL52247.1
MoxR-like ATPase.
 
  
 0.798
SDM27487.1
Protein of unknown function.
 
    0.796
SDM82236.1
N-terminal double-transmembrane domain-containing protein.
 
  
 0.784
SDL48971.1
Hypothetical protein.
 
     0.782
SDL44795.1
Hypothetical protein.
  
     0.771
SDL12163.1
Hypothetical protein.
  
     0.770
SDL70600.1
Protein of unknown function.
  
     0.770
SDL70763.1
Tetratricopeptide repeat-containing protein.
  
    0.760
SDM07714.1
Ca-activated chloride channel family protein.
 
  
 0.759
SDL46512.1
Ca-activated chloride channel family protein.
 
     0.726
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.