STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL58459.1Two component transcriptional regulator, LytTR family. (234 aa)    
Predicted Functional Partners:
SDL58490.1
GHKL domain-containing protein.
 
   0.955
SDL58672.1
Histidine kinase.
 
   0.835
SDL73879.1
Histidine kinase.
  
   0.809
SDL30063.1
Histidine kinase.
  
   0.808
SDL44892.1
Histidine kinase.
  
   0.808
SDM22336.1
Histidine kinase.
  
   0.808
SDL22811.1
Histidine kinase.
  
   0.807
SDM52655.1
Histidine kinase.
  
   0.807
SDL16272.1
Histidine kinase.
  
   0.806
SDL58955.1
Histidine kinase.
  
   0.806
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.