STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL58594.1NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. (227 aa)    
Predicted Functional Partners:
SDL28236.1
Polyketide-type polyunsaturated fatty acid synthase PfaA.
  
 
 0.768
fabZ
3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
    
  0.760
SDL58630.1
Two component transcriptional regulator, LytTR family.
       0.586
SDL58672.1
Histidine kinase.
       0.574
SDL58701.1
Putative auto-transporter adhesin, head GIN domain.
       0.574
SDM47177.1
6-pyruvoyltetrahydropterin/6- carboxytetrahydropterin synthase.
 
  
  0.518
SDL28205.1
Acyl transferase domain-containing protein; Belongs to the P-Pant transferase superfamily.
  
 
 0.473
araB
L-ribulokinase.
    
 0.459
SDL98269.1
L-threonine aldolase.
    
  0.458
SDM27117.1
6-pyruvoyltetrahydropterin/6- carboxytetrahydropterin synthase.
 
  
  0.454
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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