STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL70275.1phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein. (330 aa)    
Predicted Functional Partners:
SDM99977.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
 0.997
SDN00006.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 0.996
SDM02006.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
  
 0.993
SDM01988.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
  
 0.992
SDL46633.1
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
  
  0.980
SDL52312.1
Peptidyl-prolyl cis-trans isomerase SurA.
   
   0.692
SDL74498.1
Chemotaxis protein MotB.
   
   0.647
SDL75885.1
Chemotaxis protein MotB.
   
   0.647
SDM90688.1
Beta-barrel assembly machine subunit BamD.
  
   
 0.604
SDM98201.1
Beta-barrel assembly machine subunit BamA.
 
    0.583
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.