STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL75626.1Uncharacterized membrane protein SpoIIM, required for sporulation. (312 aa)    
Predicted Functional Partners:
SDL75709.1
Protein of unknown function.
     0.952
SDL75686.1
Protein of unknown function.
 
     0.936
SDL75656.1
Hypothetical protein.
 
     0.933
SDL75599.1
Uncharacterized membrane protein YckC, RDD family.
 
    0.920
SDN11507.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
 
  
 0.815
SDM65520.1
Uncharacterized membrane protein YckC, RDD family.
 
    0.516
SDL96556.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.506
SDM56674.1
Spore maturation protein SpmA.
   
  
 0.505
SDL75737.1
Threonine synthase.
       0.475
SDL74828.1
Uncharacterized protein YjiK.
  
     0.442
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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