STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL97428.1DNA-binding transcriptional regulator, XRE-family HTH domain. (68 aa)    
Predicted Functional Partners:
SDL97490.1
Putative transcriptional regulator.
     
 0.737
SDM27400.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
 0.712
SDM67471.1
Hypothetical protein.
    
 
 0.637
SDL86896.1
Tfp pilus assembly protein PilF.
     
 0.626
SDL97537.1
Hypothetical protein.
       0.507
SDM26694.1
Protein of unknown function.
  
     0.505
SDL97399.1
Hypothetical protein.
       0.405
SDL54071.1
Hypothetical protein.
  
     0.400
SDM43173.1
Hypothetical protein.
  
     0.400
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.