STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL98730.1Predicted lipoprotein with conserved Yx(FWY)xxD motif. (277 aa)    
Predicted Functional Partners:
SDM55246.1
YCII-related domain-containing protein.
  
     0.528
SDL98647.1
N-acetylglutamate synthase, GNAT family.
       0.506
SDL98671.1
Methyltransferase domain-containing protein.
       0.506
SDL98700.1
Concentrative nucleoside transporter, CNT family.
       0.506
SDL40602.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.478
SDN06761.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.472
SDL45704.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.459
SDL98608.1
Hypothetical protein.
       0.433
SDM43680.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.426
SDL71994.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.421
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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