STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL99543.1Putative zinc-finger. (258 aa)    
Predicted Functional Partners:
SDL99565.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
   0.951
SDL99513.1
Hypothetical protein.
 
     0.940
SDL99479.1
Hypothetical protein.
 
     0.938
SDM88636.1
Hypothetical protein.
 
     0.792
SDL99584.1
Protein of unknown function.
 
     0.648
SDL84973.1
Protein of unknown function.
  
     0.645
SDL76232.1
Inosine-uridine nucleoside N-ribohydrolase.
  
     0.543
SDM40760.1
Hypothetical protein.
  
     0.502
SDM35581.1
Metal binding domain of Ada.
  
     0.465
SDM88702.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
   0.457
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.