STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM00927.1Sugar (pentulose or hexulose) kinase. (459 aa)    
Predicted Functional Partners:
SDM00862.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
 
 0.962
SDM00896.1
L-rhamnose isomerase / sugar isomerase.
 
  
 0.960
SDM00787.1
Substrate-binding protein-like domain-containing protein.
 
 
 
 0.890
SDN00734.1
L-rhamnose mutarotase.
  
  
 0.810
SDM00962.1
L-lactate dehydrogenase complex protein LldE.
 
     0.688
SDM05282.1
L-ribulose 5-phosphate 4-epimerase.
  
 
 0.642
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
 
 0.629
SDM00753.1
L-rhamnose-H+ transport protein.
 
  
 0.617
SDM30181.1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.586
SDM71474.1
Starch-binding associating with outer membrane.
  
     0.545
Your Current Organism:
Siphonobacter aquaeclarae
NCBI taxonomy Id: 563176
Other names: DSM 21668, Flexibacteraceae bacterium P2, NCAIM B 02328, S. aquaeclarae, Siphonobacter aquaeclarae Tancsics et al. 2010, strain P2
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